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User Manual:

Search candidate circular permutants based on SeqCP

Include query sequences in file "example.fa" in FASTA format
$ python3 SeqCP.py -in example -db PDB2019NR
Results would be listed in file "example_Scoring_Result.txt"

Use custom databases

Create custom databases in folder "dataset" by using BLAST

If the database sequence names are in PDB format:
$ python3 SeqCP.py -in example -db name of database -dataType PDB
If the database sequences names are in UniProt format:
$ python3 SeqCP.py -in example -db name of database -dataType UniProt
If the sequences names are not in PDB/UniProt format:
$ python3 SeqCP.py -in example -db name of database -dataType None


SeqCP parameters for initial filtration

For details: 
$ python3 SeqCP.py -h